List of genotyping Chips, Platforms and Arrays

The list above shows all genotyping chips currently accepted by GenoEx-PSE and GenoEx-GDE services.

Please use a platform/array combination for PSE and array for GDE, according to the specific manuals, available on genoex.org

Please note that the Name of Genotyping Chip column is not to be used in GenoEx files. It only gives here additional information for proper identifications of the chips used.

Name of Genotyping Chip

Platform or Lab, or ...

SNPs number

GDE
Array Identifier

PSE

GDE

Affymetrix Axiom Bovine 15K

Affymetrix

15036



x

GeneChip Bovine Genome

Affymetrix

24072



x

Affymetrix Axiom Bovine 25K

Affymetrix

25068



x

Affymetrix Axiom Bovine Swiss custom LD v1

Affymetrix

42612

42612_a

x

Affymetrix Axiom Bovine 50K

Affymetrix

51987



x

Affymetrix Axiom STGen100 GenVis Medium Density

Affymetrix

61915

61915_a

x

Affymetrix Axiom STGen100 GenVis Medium Density V2

Affymetrix

63836

63836_a

x

Affymetrix SWISScowHD Version 1

Affymetrix

111839

111839_a

x

Affymetrix SWISScowHD Version 2

Affymetrix

95053

95053_a

x

Affymetrix Axiom Bovine

Affymetrix

648875



x

AxionCustom300K NHSeekV1

ThermoFisher

299326

299326_a

x

AxionCustom300K NHSeekV1Dairy

ThermoFisher

192655

192655_a

x

DAC-BS50

Illumina

43376

43376_a

x

x

EuroG 10K v2

Eurogenomics

9001



x

EuroG 10K v1

Eurogenomics

9072

x

EuroG 10K v4

Eurogenomics

9925

x

EuroG 10K v3

Eurogenomics

9983

x

EuroG 10K v7

Eurogenomics

10706

x

EuroG 10K v8

Eurogenomics

10979

x

EuroG 10K v6

Eurogenomics

11009

x

EuroG 10K v5

Eurogenomics

11497

x

EuroG MD v1

Eurogenomics

44870

x

EuroG MD v1

Eurogenomics (lab. Labogena)

41911

41911_a

x

EuroG MD v1

Eurogenomics

41913

41913_a

x

EuroG MD v2

Eurogenomics

45250

45250_a

x

EuroG MD v3

Eurogenomics

59963

59963_a

x

EuroG MD v4

Labogena

60295

60295_a

x

GeneSeek Dairy Ultra LD v2

GeneSeek

7049

x

GeenSeek Genomic Profiler LD v1

GeneSeek

8610

x

GeenSeek Genomic Profiler 9K

GeneSeek

8984

8984_a

x

GeneSeek Genomic Profiler

GeneSeek

19725

19725_a

x

x

GeneSeek Genomic Profiler LD v3

GeneSeek

26151

26151_a

x

x

GeneSeek Genomic Profiler LD v3

GeneSeek

26151

26151_b

x

GeneSeek Genomic Profiler v4

GeneSeek

30105

30105_a

x

x

GeneSeek Genomic Profiler SuperLD v4

GeneSeek

30111

30111_a

x

GeneSeek Genomic Profiler indicus

GeneSeek

35090

x

GeneSeek Genomic Profiler 50K

GeneSeek

47662

47662_a

x

GeneSeek Genomic Profiler 50K

GeneSeek

47843

47843_a

x

x

GeneSeek Genomic Profiler 65K

GeneSeek

65317

65317_a

x

GeneSeek Genomic Profiler HD v1

GeneSeek

76999

76999_a

x

x

GeneSeek Genomic Profiler 80K

GeneSeek

77376

x

GeneSeek Genomic Profiler Bovine 100K

GeneSeek

95256

95256_a

x

GeneSeek Genomic Profiler Bovine 100K (custom CDCB)

GeneSeek

94121

94121_a

x

GeneSeek Genomic Profiler HD v2

GeneSeek

139480

139480_a

x

x

GeneSeek Genomic Profiler HD v3

GeneSeek

139376

139376_a

x

ICBF International Dairy and Beef v2

ICBF custom

16327

16327_a

x

x

ICBF International Dairy and Beef v1

ICBF custom

16499

16499_a

x

x

ICBF International Dairy and Beef v3

ICBF custom

52690

52690_a

x

x

ICBF International Dairy and Beef v4

Thermofisher

53262

x

ICBF International Dairy and Beef v5

Thermofisher

51443

51443_a

x

x

ICBF International Dairy and Beef

ICBF custom

217807

x

Illumina Bovine3k BeadChip

Illumina

2900

2900_a

x

x

Illumina BovineLD BeadChip

Illumina

6909

6909_a

x

x

Illumina BovineLD v1.1 BeadChip

Illumina

6912

x

Illumina BovineLD v.2 BeadChip

Illumina

7931

7931_a

x

x

Illumina Bovine 9K

Illumina

8762

8762_a

x

x

Illumina BovineSNP50v3 BeadChip

Illumina

53218

53218_a

x

x

Illumina BovineSNP50v1 BeadChip

Illumina

54001

54001_a

x

x

Illumina BovineSNP50v2 BeadChip

Illumina

54609

54609_a

x

x

Illumina BovineHD BeadChip

Illumina

777962

777962_a

x

x

Illumina 800K BovineHD beadChip

Illumina

786799

x

LIAJ custom chip v1

Illumina

50464

x

Weatherbys Versa 50K

Weatherbys

49629

x

Weatherbys Scientific Bovine VersaSNP 50K

Weatherbys

49745

49745_a

x

Zoetis Low Density Version 5

Illumina

27780

27780_a

x

Zoetis Low Density Version 4

Illumina

18819

18819_a

x

x

Zoetis Low Density Version 4

Illumina

18815

18815_a

x

Zoetis ZBT Low Density

Illumina

38275

38275_a

x

Zoetis ZBU Medium Density

Illumina

55341

55341_a

x

Zoetis ZBU Medium Density

Illumina

58315

58315_a

x

Zoetis Medium Density Version 2

Illumina

60914

60914_a

x

Zoetis Illumina ZOC

Illumina

70148

70148_a

x

no name

44887

44887_a

x

no name

61792

61792_a

x

public/platforms_arrays (last edited 2024-01-30 17:20:58 by KatarineHaugaard)